PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g16670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 299aa    MW: 32153.9 Da    PI: 4.767
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g16670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.3e-06447542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  CA07g16670  4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
                7*****999*********************66899999999986 PP

2zf-B_box29.21.9e-095390237
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                ++++C+ ++e    +fC +++ llC++C  ++H    H
  CA07g16670 53 SMPMCDICQETVGYFFCLEDRALLCPKCDIAIHTAnpH 90
                689********9*********************55674 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000211.55E-7347No hitNo description
SMARTSM003362.8E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735299IPR000315B-box-type zinc finger
SMARTSM003361.7E-135299IPR000315B-box-type zinc finger
PfamPF006432.4E-65390IPR000315B-box-type zinc finger
CDDcd000213.24E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSAS SSSMPMCDIC  60
QETVGYFFCL EDRALLCPKC DIAIHTANPH VAVHQRFLLT GVKVGLEPVD PGGASSAGTS  120
QSIQKVSEPE SASLFKRNAP VSLDAQINKV LPPQASGVGD FAPTKSPFSG GSEAGSMPQW  180
QFDEFIGLND FNHNYGYMDN GTSKSRDNGK LGESDSSSLL RVDDEELDGD ECLGQVPDTS  240
WAVPQVPSPP TASGLYWPKT YQNPFDCAVF VPDISYSPSS NFQQQPPSGA RLKRRRQS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-159HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581093.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-100BBX22_ARATH; B-box zinc finger protein 22
TrEMBLK4CGP90.0K4CGP9_SOLLC; Uncharacterized protein
STRINGSolyc07g062160.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.23e-95light-regulated zinc finger protein 1